Aggregate               A Simple Aggregation Mechanism.
AnnotatedDataFrame      Class to Contain Measured Variables and Their
                        Meta-Data Description.
AssayData-class         Class "AssayData"
Biobase-package         Biobase Package Overview
ExpressionSet           Class to Contain and Describe High-Throughput
                        Expression Level Assays.
MIAME                   Class for Storing Microarray Experiment
                        Information
MultiSet                Class to Contain and Describe High-Throughput
                        Expression Level Assays.
SnpSet                  Class to Contain Objects Describing
                        High-Throughput SNP Assays.
Versioned               Class "Versioned"
VersionedBiobase        Class "VersionedBiobase"
Versions                Class "Versions"
VersionsNull            Class "VersionsNull"
abstract                Retrieve feature and sample names from eSets
                        and exprSets.
addVigs2WinMenu         Add Menu Items to an Existing/New Menu of
                        Window
aggregator              A Simple Class for Aggregators
annotatedDataFrameFrom
                        Methods for Function annotatedDataFrameFrom in
                        Package 'Biobase'
annotatedDataset        Virtual Superset for 'exprSet', 'eSet' etc.
annotation              Annotate eSet data.
assayData               Retrieve assay data from eSets and exprSets.
biocReposList           Return a list of Bioconductor package
                        repositories
cache                   Evaluate an expression if its value is not
                        already cached.
class:characterORMIAME
                        Class to Make Older Versions Compatible
class:exprList          Class Union of a List and an Environment
class:exprMatrix        Class Union for Objects Behaving Like a Matrix
class:phenoData         Class For Patient or Experiment Level Data
classVersion            Retrieve information about versioned classes
combine                 Methods for Function combine in Package
                        'Biobase'
container               A Lockable List Structure with Constraints on
                        Content
contents                Function to retrieve contents of environments
copyEnv                 List-Environment interactions
copySubstitute          Copy Between Connections or Files with
                        Configure-Like Name-Value Substitution
createPackage           Create a Package Directory from a Template
data:aaMap              Dataset: Names and Characteristics of Amino
                        Acids
data:eset               (Deprecated) dataset of class 'exprSet'
data:geneData           A subset of some expression data.
data:sample.ExpressionSet
                        Dataset of class 'ExpressionSet'
data:sample.eSet        (Deprecated) dataset of class 'eSet'
data:sample.exprSet     Dataset of class 'exprSet'
data:sample.exprSet.1   Dataset of class 'exprSet'
description             Retrieve and set overall experimental
                        information eSet-like classes.
dims                    Retrieve dimensions of all elements in a list
                        or environment
dumpPackTxt             Dump Textual Description of a Package
eSet                    Class to Contain High-Throughput Assays and
                        Experimental Metadata
esApply                 Apply for the Expression Data in 'exprSet'
exprSet                 Class for Microarray Data and Methods for
                        Processing Them
exprs                   Retrieve expression data from eSets.
featureNames            Retrieve feature and sample names from eSets
                        and exprSets.
getPkgVigs              List Vignette Files for a Package
isCurrent               Use version information to test whether class
                        is current
isUnique                Determine Unique Elements
isVersioned             Determine whether object or class contains
                        versioning information
matchpt                 Finds Nearest Neighbours for Sets of Points
                        given by NxD Coordinates
multiassign             Assign Values to a Names
note                    Informational Messages
notes                   Retrieve and set eSet and exprSet notes.
openPDF                 Open PDF Files in a Standard Viewer
openVignette            Open a Vignette or Show Vignette Selection Menu
package.version         Report Version of a Package
phenoData               Retrieve information on experimental phenotypes
                        recorded in eSet and exprSet-derived classes.
read.MIAME              Read MIAME Information into an Instance of
                        Class 'MIAME'
read.exprSet            Read Experimental Data and into an 'exprSet'
                        Object
read.phenoData          Read 'phenoData'
reporter                Example Data Frame Object for the ReporterInfo
                        Slot
reporterInfo            Retrieve and set information about reporters.
reverseSplit            A function to reverse the role of names and
                        values in a list.
rowQ                    A function to compute empirical row quantiles.
selectSome              extract aspects of a vector for concise
                        rendering
storageMode             Retrieve or set storage mode for eSets.
strbreak                Break Character Strings to Fit Width
testBioCConnection      A function to check internet connectivity to
                        Bioconductor
updateObject            Update an object to its current class
                        definition
updateOldESet           Update previously created eSet object to
                        current eSet structure
userQuery               A function to query the user for input