reporter               package:Biobase               R Documentation

_E_x_a_m_p_l_e _D_a_t_a _F_r_a_m_e _O_b_j_e_c_t _f_o_r _t_h_e _R_e_p_o_r_t_e_r_I_n_f_o _S_l_o_t

_D_e_s_c_r_i_p_t_i_o_n:

     The 'reporter' object is a 500 by 1 data frame.  The rows
     represent the 500 probe ids in the 'geneData' data.  The values in
     'reporter' are the predefined probe types for the probes.
     'reporter' is used to created the exprSet object 'sample.exprSet'.

_U_s_a_g_e:

     data(reporter)

_F_o_r_m_a_t:

     A 500 by 1 data frame

_D_e_t_a_i_l_s:

     There are 10 predefined probe types:

'_A_F_F_X-' Quality Control (QC)

'__f_' SequenceFamily

'__g_' CommonGroups

'__s_' SimilarityConstraint

'__r_' RulesDropped

'__i_' Incomplete

'__b_' AmbiguousProbeSet

'__l_' LongProbeSet

'__a_t' AntiSenseTarget

'__s_t' SenseTarget

_S_o_u_r_c_e:

     Affymetrix GeneChip Expression Analysis Data Analysis Fundamentals
     (<URL:
     http://www.affymetrix.com/Auth/support/downloads/manuals/data_anal
     ysis_fundamentals_manual.pdf>)

_R_e_f_e_r_e_n_c_e_s:

     ~~ possibly secondary sources and usages ~~

_E_x_a_m_p_l_e_s:

     data(reporter)
     ## maybe str(reporter) ; plot(reporter) ...