!=,ANY,BString-method	BString-class
!=,ANY,BStringViews-method	BStringViews-class
!=,BString,ANY-method	BString-class
!=,BString,BString-method	BString-class
!=,BString,BStringViews-method	BStringViews-class
!=,BStringViews,ANY-method	BStringViews-class
!=,BStringViews,BString-method	BStringViews-class
!=,CharBuffer,CharBuffer-method	Biostrings-internals
!=,IntBuffer,IntBuffer-method	Biostrings-internals
==,ANY,BString-method	BString-class
==,ANY,BStringViews-method	BStringViews-class
==,BString,ANY-method	BString-class
==,BString,BString-method	BString-class
==,BString,BStringViews-method	BStringViews-class
==,BStringViews,ANY-method	BStringViews-class
==,BStringViews,BString-method	BStringViews-class
==,CharBuffer,CharBuffer-method	Biostrings-internals
==,IntBuffer,IntBuffer-method	Biostrings-internals
AAString	AAString-class
AAString-class	AAString-class
AA_ALPHABET	AAString-class
adjacentViews	BStringViews-constructors
alignScore	needwunsQS
alignScore.needwunsQS	needwunsQS
alphabet	Biostrings-internals
alphabet,AAString-method	AAString-class
alphabet,BStringCodec-method	Biostrings-internals
alphabet,DNAString-method	DNAString-class
alphabet,RNAString-method	RNAString-class
alphabetFrequency	alphabetFrequency
alphabetFrequency,BString-method	alphabetFrequency
alphabetFrequency,BStringViews-method	alphabetFrequency
alphabetFrequency,DNAString-method	alphabetFrequency
alphabetFrequency,RNAString-method	alphabetFrequency
AMINO_ACID_CODE	AMINO_ACID_CODE
as.character,BString-method	BString-class
as.character,BStringViews-method	BStringViews-class
as.complex	as.complex
as.complex,DNAString-method	as.complex
as.list,BStringViews-method	BStringViews-class
as.matrix,BStringViews-method	BStringViews-class
blosum50	blosum50
BString	BString-class
BString-class	BString-class
BStringCodec	Biostrings-internals
BStringCodec-class	Biostrings-internals
BStringViews	BStringViews-constructors
BStringViews,BString-method	BStringViews-constructors
BStringViews,BStringViews-method	BStringViews-constructors
BStringViews,file-method	BStringViews-constructors
BStringViews-class	BStringViews-class
BStringViews-constructors	BStringViews-constructors
CharBuffer	Biostrings-internals
CharBuffer-class	Biostrings-internals
class:AAString	AAString-class
class:BString	BString-class
class:BStringCodec	Biostrings-internals
class:BStringViews	BStringViews-class
class:CharBuffer	Biostrings-internals
class:DNAString	DNAString-class
class:IntBuffer	Biostrings-internals
class:PrintableCharBuffer	Biostrings-internals
class:RNAString	RNAString-class
complement	reverseComplement
complement,BStringViews-method	reverseComplement
complement,DNAString-method	reverseComplement
countPattern	matchPattern
countPattern,ANY,BString-method	matchPattern
countPattern,ANY,BStringViews-method	matchPattern
countPattern,ANY,character-method	matchPattern
debug_CharBuffer	Biostrings-internals
debug_shiftor	Biostrings-internals
debug_utils	Biostrings-internals
desc	BStringViews-class
desc,BStringViews-method	BStringViews-class
DNAString	DNAString-class
DNAString-class	DNAString-class
DNA_ALPHABET	DNAString-class
first	BStringViews-class
first,BStringViews-method	BStringViews-class
GENETIC_CODE	GENETIC_CODE
initialize,AAString-method	AAString-class
initialize,BString-method	BString-class
initialize,BStringCodec-method	Biostrings-internals
initialize,BStringViews-method	BStringViews-constructors
initialize,CharBuffer-method	Biostrings-internals
initialize,DNAString-method	DNAString-class
initialize,IntBuffer-method	Biostrings-internals
initialize,RNAString-method	RNAString-class
IntBuffer	Biostrings-internals
IntBuffer-class	Biostrings-internals
IUPAC_CODE_MAP	IUPAC_CODE_MAP
last	BStringViews-class
last,BStringViews-method	BStringViews-class
length,BString-method	BString-class
length,BStringViews-method	BStringViews-class
length,CharBuffer-method	Biostrings-internals
length,IntBuffer-method	Biostrings-internals
letter	BString-class
letter,BString-method	BString-class
matchDNAPattern	matchPattern
matchPattern	matchPattern
matchPattern,ANY,BString-method	matchPattern
matchPattern,ANY,BStringViews-method	matchPattern
matchPattern,ANY,character-method	matchPattern
mismatch	matchPattern
mismatch,ANY,BStringViews-method	matchPattern
nchar,BString-method	BString-class
nchar,BStringViews-method	BStringViews-class
needwunsQS	needwunsQS
needwunsQS,BString,character-method	needwunsQS
needwunsQS,character,BString-method	needwunsQS
needwunsQS,character,character-method	needwunsQS
print.needwunsQS	needwunsQS
PrintableCharBuffer	Biostrings-internals
PrintableCharBuffer-class	Biostrings-internals
readFASTA	readFASTA
reverse	reverseComplement
reverse,BString-method	reverseComplement
reverse,BStringViews-method	reverseComplement
reverseComplement	reverseComplement
reverseComplement,BStringViews-method	reverseComplement
reverseComplement,DNAString-method	reverseComplement
RNAString	RNAString-class
RNAString-class	RNAString-class
RNA_ALPHABET	RNAString-class
show,BString-method	BString-class
show,BStringViews-method	BStringViews-class
show,CharBuffer-method	Biostrings-internals
show,externalptr-method	Biostrings-internals
show,IntBuffer-method	Biostrings-internals
show,PrintableCharBuffer-method	Biostrings-internals
subBString	BString-class
subBString,BString-method	BString-class
subject	BStringViews-class
subject,BStringViews-method	BStringViews-class
toString,BString-method	BString-class
toString,BStringViews-method	BStringViews-class
toString,CharBuffer-method	Biostrings-internals
views	BStringViews-constructors
width	BStringViews-class
width,BStringViews-method	BStringViews-class
yeastSEQCHR1	yeastSEQCHR1
[,BString-method	BString-class
[,BStringViews-method	BStringViews-class
[,CharBuffer-method	Biostrings-internals
[,IntBuffer-method	Biostrings-internals
[,PrintableCharBuffer-method	Biostrings-internals
[<-,BString-method	BString-class
[<-,BStringViews-method	BStringViews-class
[<-,CharBuffer-method	Biostrings-internals
[<-,IntBuffer-method	Biostrings-internals
[[,BStringViews-method	BStringViews-class
[[<-,BStringViews-method	BStringViews-class