aafIntensity-class          package:annaffy          R Documentation

_C_l_a_s_s _a_a_f_I_n_t_e_n_s_i_t_y, _a _c_l_a_s_s _f_o_r _g_e_n_e _e_x_p_r_e_s_s_i_o_n _v_a_l_u_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     A class for displaying gene expression values with a green
     background of differing intensities.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects are generally created by the 'aafTableInt' constructor. 
     Objects can also be created manually by calls of the form
     'new("aafIntensity", intensity)'.

_S_l_o_t_s:

     '._D_a_t_a': Object of class 'numeric'

_E_x_t_e_n_d_s:

     Class 'numeric', from data part.

_M_e_t_h_o_d_s:

     _g_e_t_T_D (aafIntensity): Returns an HTML table cell with background
          varrying from white to green depending on intensity. Scaling
          is controlled by two options, 'minIntensity' (fully white)
          and 'maxIntensity' (fully green), usually set by writeHTML.

     See generic implementations of 'getText', 'getURL', 'getHTML', and
     'getCSS'.

_A_u_t_h_o_r(_s):

     Colin A. Smith, annaffy@colinsmith.org

_S_e_e _A_l_s_o:

     aafTableInt