ACCNUMStats             package:annotate             R Documentation

_P_r_o_v_i_d_e_s _s_t_a_t_i_s_t_i_c_s _o_n _t_h_e _t_y_p_e_s _o_f _i_d_s _u_s_e_d _f_o_r _t_h_e _A_C_C_N_U_M
_e_n_v_i_r_o_n_m_e_n_t _o_f _a _g_i_v_e_n _d_a_t_a _p_a_c_k_a_g_e

_D_e_s_c_r_i_p_t_i_o_n:

     Given a data package name, ACCNUMStats counts how many of the
     probe ids are mapped to GenBank Accession numbers, UniGene ids,
     RefSeq ids, or Image clone ids.

_U_s_a_g_e:

     ACCNUMStats(pkgName)
     whatACC(accs)

_A_r_g_u_m_e_n_t_s:

 pkgName: 'pkgName' a character string for the name of a BioC data
          package

    accs: 'accs' a vector of character string for the ids whose type
          will be determined

_D_e_t_a_i_l_s:

     The ACCNUM environment of each BioC data package contains mappings
     between probe ids and a set of public ids based on which mappings
     of probe ids to other annotation data can be obtained using public
     data sources. The set of ids were provided by a manufacturer or
     user at the time when the data package was built. The
     manufacturer/user provided ids can be of different types of public
     ids, such as GenBank Accession number, UniGene ids, etc..

     ACCNUMStats counts the number of probes that are mapped to
     different types of public ids and have the results presented in a
     table.

_V_a_l_u_e:

_A_u_t_h_o_r(_s):

     Jianhua Zhang

_R_e_f_e_r_e_n_c_e_s:

     The ACCNUM environment of a platform dependent BioC data package

_E_x_a_m_p_l_e_s:

     if(require("hgu95av2")){
         ACCNUMStats("hgu95av2")    
     }