homoData-class package:annotate R Documentation _C_l_a_s_s "_h_o_m_o_D_a_t_a" _D_e_s_c_r_i_p_t_i_o_n: A class to present data for HomologGene data of a matching sequence _O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s: Objects can be created by calls of the form 'new("homoData", ...)'. _S_l_o_t_s: '_h_o_m_o_O_r_g': Object of class '"character"' the scientific name of the organism of interest '_h_o_m_o_L_L': Object of class '"numeric"' the LocusLink id of the gene of interest '_h_o_m_o_T_y_p_e': Object of class '"character"' the type of similarity. Valid values include B - a recipiprocal best best between 3 or more organisms, b - a reciprocal best match, and c - a curated homology relationship '_h_o_m_o_P_S': Object of class '"numeric"' percent similarity value '_h_o_m_o_U_R_L': Object of class '"character"' the URL for curated homology relationship '_h_o_m_o_A_C_C': Object of class '"character"' the accession number '_h_o_m_o_H_G_I_D': Object of class '"numeric"' the internal HomologGeneID _M_e_t_h_o_d_s: _h_o_m_o_P_S 'signature(object = "homoData")': the get function for slot 'homoPS' _h_o_m_o_L_L 'signature(object = "homoData")': the get function for slot 'homoLL' _h_o_m_o_O_r_g 'signature(object = "homoData")': the get function for slot 'homoOrg' _h_o_m_o_T_y_p_e 'signature(object = "homoData")': the get function for slot 'homoType' _h_o_m_o_U_R_L 'signature(object = "homoData")': the get function for slot 'homoURL' _h_o_m_o_A_C_C 'signature(object = "homoData")': the get function for slot 'homoACC' _h_o_m_o_H_G_I_D 'signature(object = "homoHGID")': the get function for slot 'homoHGID' _N_o_t_e: This function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide Bioinfomatics functionalities throug R _A_u_t_h_o_r(_s): Jianhua Zhang _R_e_f_e_r_e_n_c_e_s: _E_x_a_m_p_l_e_s: new("homoData", homoPS = 82.3, homoLL = 2324853, homoOrg = "Homo sapins", homoType = "B", homoURL = "", homoHGID = 12345)