alongChrom alongChrom amplicon.plot amplicon.plot buildACMainLabel alongChrom cColor cColor closeHtmlPage openHtmlPage connection-class classes cPlot cPlot cScale cScale cullACXPoints alongChrom dChip.colors GetColor defMapFun plotExpressionGraph densCols smoothscatter dispACXaxis alongChrom doACCumPlot alongChrom doACImagePlot alongChrom doACLocalPlot alongChrom doACMatPlot alongChrom emptyACPlot alongChrom expressionSet133a eset133a file-class classes fixACPhysPoints alongChrom getACClosestPos alongChrom getACDataEnv alongChrom getACExprs alongChrom getACGeneSyms alongChrom getACPlotLabs alongChrom getACStrandVals alongChrom GetColor GetColor getPlotExpressionColors plotExpressionGraph greenred.colors GetColor highlightACDups alongChrom histStack histStack identifyLines identifyLines imageMap imageMap imageMap,matrix,connection,list,character-method imageMap imageMap,matrix-method imageMap imageMap-methods imageMap limitACXRange alongChrom make.chromOrd make.chromOrd Makesense Makesense Makesense,eSet,character-method Makesense Makesense,eSet,missing-method Makesense Makesense,exprSet,character-method Makesense Makesense,exprSet,missing-method Makesense Makesense,matrix,character-method Makesense multidensity multiecdf multidensity.default multiecdf multidensity.formula multiecdf multiecdf multiecdf multiecdf.default multiecdf multiecdf.formula multiecdf openHtmlPage openHtmlPage plotChr plotChr plotExpressionGraph plotExpressionGraph saveeps savepng savepdf savepng savepng savepng savetiff savepng scaleACData alongChrom smoothScatter smoothscatter