maDotsDefaults            package:marray            R Documentation

_R_e_p_l_a_c_e _g_r_a_p_h_i_c_a_l _d_e_f_a_u_l_t _p_a_r_a_m_e_t_e_r_s _b_y _u_s_e_r _s_u_p_p_l_i_e_d _p_a_r_a_m_e_t_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function may be used to compare default graphical parameters
     for microarray diagnostic plots to user supplied parameters given
     in '...'. User supplied parameters overwrite the defaults. It is
     used in 'maBoxplot', 'maPlot', and 'maImage'.

_U_s_a_g_e:

     maDotsDefaults(dots, defaults)

_A_r_g_u_m_e_n_t_s:

    dots: List of user supplied parameters, e.g. from 'list(...)'.

defaults: List of default parameters, e.g. from the function
          'maDefaultPar'.

_V_a_l_u_e:

    args: List of graphical parameters.

_A_u_t_h_o_r(_s):

     Sandrine Dudoit, <URL: http://www.stat.berkeley.edu/~sandrine>.

_R_e_f_e_r_e_n_c_e_s:

     S. Dudoit and Y. H. Yang. (2002). Bioconductor R packages for
     exploratory analysis and normalization of cDNA microarray data. In
     G. Parmigiani, E. S. Garrett, R. A. Irizarry and S. L. Zeger,
     editors, _The Analysis of Gene Expression Data: Methods and
     Software_, Springer, New York.

_S_e_e _A_l_s_o:

     'maDefaultPar', 'maBoxplot', 'maPlot', 'maImage'.

_E_x_a_m_p_l_e_s:

     dots<-list(xlab="X1", ylab="Y1")
     defaults<-list(xlab="X1", ylab="Y2", col=2)
     pars<-maDotsDefaults(dots, defaults)

     do.call("plot",c(list(x=1:10), pars))