\HeaderA{siggenes-internal}{Internal siggenes functions}{siggenes.Rdash.internal}
\aliasA{add.target2href}{siggenes-internal}{add.target2href}
\aliasA{adjust.for.mt}{siggenes-internal}{adjust.for.mt}
\aliasA{build.dperm}{siggenes-internal}{build.dperm}
\aliasA{cat.stat}{siggenes-internal}{cat.stat}
\aliasA{check.chipname}{siggenes-internal}{check.chipname}
\aliasA{col2hex}{siggenes-internal}{col2hex}
\aliasA{d.null}{siggenes-internal}{d.null}
\aliasA{d.stat}{siggenes-internal}{d.stat}
\aliasA{ebam.old}{siggenes-internal}{ebam.old}
\aliasA{ebam.wilc.old}{siggenes-internal}{ebam.wilc.old}
\aliasA{find.a0.old}{siggenes-internal}{find.a0.old}
\aliasA{formatSAM}{siggenes-internal}{formatSAM}
\aliasA{getTD4Affy}{siggenes-internal}{getTD4Affy}
\aliasA{make.tablecode}{siggenes-internal}{make.tablecode}
\aliasA{neglogLik.repeat}{siggenes-internal}{neglogLik.repeat}
\aliasA{p0.est}{siggenes-internal}{p0.est}
\aliasA{pairt.cl.transform}{siggenes-internal}{pairt.cl.transform}
\aliasA{pairt.samp}{siggenes-internal}{pairt.samp}
\methaliasA{pairt.samp.transform}{siggenes-internal}{pairt.samp.transform}
\aliasA{pretty.mat.fdr}{siggenes-internal}{pretty.mat.fdr}
\aliasA{pretty.mat.sig}{siggenes-internal}{pretty.mat.sig}
\aliasA{q.value.old}{siggenes-internal}{q.value.old}
\aliasA{q.value.wilc}{siggenes-internal}{q.value.wilc}
\aliasA{quantiles}{siggenes-internal}{quantiles}
\aliasA{R.fold.old}{siggenes-internal}{R.fold.old}
\aliasA{ratio.est}{siggenes-internal}{ratio.est}
\aliasA{Rfold.cal}{siggenes-internal}{Rfold.cal}
\aliasA{rs.cal}{siggenes-internal}{rs.cal}
\aliasA{sam.sampler}{siggenes-internal}{sam.sampler}
\aliasA{setup.mat.samp}{siggenes-internal}{setup.mat.samp}
\aliasA{stats.cal}{siggenes-internal}{stats.cal}
\aliasA{wilc.stat}{siggenes-internal}{wilc.stat}
\aliasA{xy.cal}{siggenes-internal}{xy.cal}
\keyword{internal}{siggenes-internal}
\begin{Description}\relax
Internal siggenes functions.
\end{Description}
\begin{Details}\relax
These functions are not meant to be directly called by the user.
\end{Details}
\begin{Author}\relax
Holger Schwender, \email{holger.schw@gmx.de}
\end{Author}