$,AnnDbBimap-method	AnnDbBimap-envirAPI
AgiAnnDbMap	Bimap
AgiAnnDbMap-class	Bimap
AnnDbBimap	Bimap
AnnDbBimap-class	Bimap
AnnDbBimap-envirAPI	AnnDbBimap-envirAPI
AnnDbMap	Bimap
AnnDbMap-class	Bimap
AnnDbObj	AnnDbObj-class
AnnDbObj-class	AnnDbObj-class
AnnDbObj-objects	AnnDbObj-class
AnnDbPkg-checker	AnnDbPkg-checker
AnnDbPkg-maker	AnnDbPkg-maker
AnnDbPkgSeed	AnnDbPkg-maker
AnnDbPkgSeed-class	AnnDbPkg-maker
AnnObj	AnnotationDbi-internals
AnnObj-class	AnnotationDbi-internals
as.character,AnnDbBimap-method	BimapFormatting
as.list	BimapFormatting
as.list,AgiAnnDbMap-method	BimapFormatting
as.list,AnnDbBimap-method	BimapFormatting
as.list,Bimap-method	BimapFormatting
as.list,GoAnnDbBimap-method	BimapFormatting
as.list,GOTermsAnnDbBimap-method	BimapFormatting
as.list,IpiAnnDbMap-method	BimapFormatting
available.chipdbschemas	available.db0pkgs
available.db0pkgs	available.db0pkgs
available.dbschemas	available.db0pkgs
Bimap	Bimap
Bimap-class	Bimap
Bimap-direction	Bimap-direction
Bimap-keys	Bimap-keys
Bimap-toTable	Bimap-toTable
BimapFormatting	BimapFormatting
buildEntrezGeneDb	NCBI_getters
checkMAPCOUNTS	AnnDbPkg-checker
class:AgiAnnDbMap	Bimap
class:AnnDbBimap	Bimap
class:AnnDbMap	Bimap
class:AnnDbObj	AnnDbObj-class
class:AnnDbPkgSeed	AnnDbPkg-maker
class:AnnObj	AnnotationDbi-internals
class:Bimap	Bimap
class:FlatBimap	AnnotationDbi-internals
class:Go3AnnDbBimap	Bimap
class:GOAllFrame	GOFrame
class:GoAnnDbBimap	Bimap
class:GOFrame	GOFrame
class:GOTerms	GOTerms-class
class:GOTermsAnnDbBimap	Bimap
class:IpiAnnDbMap	Bimap
class:KEGGFrame	KEGGFrame
class:L2Rlink	AnnotationDbi-internals
class:ProbeAnnDbBimap	Bimap
class:ProbeAnnDbMap	Bimap
class:ProbeGo3AnnDbBimap	Bimap
class:ProbeIpiAnnDbMap	Bimap
colmetanames	Bimap-toTable
colmetanames,AnnDbBimap-method	Bimap-toTable
colmetanames,FlatBimap-method	Bimap-toTable
colnames	Bimap-toTable
colnames,AnnDbBimap-method	Bimap-toTable
colnames,FlatBimap-method	Bimap-toTable
contents,Bimap-method	AnnDbBimap-envirAPI
count.links	Bimap-toTable
count.links,Bimap-method	Bimap-toTable
count.links,Go3AnnDbBimap-method	Bimap-toTable
count.mappedkeys	Bimap-keys
count.mappedkeys,ANY-method	Bimap-keys
count.mappedkeys,Bimap-method	Bimap-keys
count.mappedLkeys	Bimap-direction
count.mappedLkeys,AgiAnnDbMap-method	Bimap-direction
count.mappedLkeys,AnnDbBimap-method	Bimap-direction
count.mappedLkeys,Bimap-method	Bimap-direction
count.mappedLkeys,Go3AnnDbBimap-method	Bimap-direction
count.mappedRkeys	Bimap-direction
count.mappedRkeys,AnnDbBimap-method	Bimap-direction
count.mappedRkeys,AnnDbMap-method	Bimap-direction
count.mappedRkeys,Bimap-method	Bimap-direction
count.mappedRkeys,Go3AnnDbBimap-method	Bimap-direction
createAnnObjs.SchemaChoice	AnnotationDbi-internals
createSimpleBimap	createSimpleBimap
dbconn	AnnDbObj-class
dbconn,AnnDbObj-method	AnnDbObj-class
dbconn,environment-method	AnnDbObj-class
dbfile	AnnDbObj-class
dbfile,AnnDbObj-method	AnnDbObj-class
dbfile,environment-method	AnnDbObj-class
dbFileConnect	AnnotationDbi-internals
dbFileDisconnect	AnnotationDbi-internals
dbInfo	AnnDbObj-class
dbInfo,AnnDbObj-method	AnnDbObj-class
dbInfo,DBIConnection-method	AnnDbObj-class
dbInfo,environment-method	AnnDbObj-class
dbmeta	AnnDbObj-class
dbmeta,AnnDbObj-method	AnnDbObj-class
dbmeta,DBIConnection-method	AnnDbObj-class
dbmeta,environment-method	AnnDbObj-class
dbschema	AnnDbObj-class
dbschema,AnnDbObj-method	AnnDbObj-class
dbschema,DBIConnection-method	AnnDbObj-class
dbschema,environment-method	AnnDbObj-class
debugSQL	AnnotationDbi-internals
Definition	GOTerms-class
Definition,character-method	GOTerms-class
Definition,GOTerms-method	GOTerms-class
Definition,GOTermsAnnDbBimap-method	GOTerms-class
dim,Bimap-method	Bimap-toTable
direction	Bimap-direction
direction,AnnDbBimap-method	Bimap-direction
direction,FlatBimap-method	Bimap-direction
direction<-	Bimap-direction
direction<-,AnnDbBimap-method	Bimap-direction
direction<-,AnnDbMap-method	Bimap-direction
direction<-,FlatBimap-method	Bimap-direction
eapply	AnnDbBimap-envirAPI
eapply,Bimap-method	AnnDbBimap-envirAPI
exists	AnnDbBimap-envirAPI
exists,ANY,ANY,Bimap-method	AnnDbBimap-envirAPI
exists,ANY,Bimap,missing-method	AnnDbBimap-envirAPI
FlatBimap	AnnotationDbi-internals
FlatBimap-class	AnnotationDbi-internals
get	AnnDbBimap-envirAPI
get,ANY,AnnDbBimap,missing-method	AnnDbBimap-envirAPI
get,ANY,ANY,AnnDbBimap-method	AnnDbBimap-envirAPI
getBimapFilters	BimapFiltering
getBimapFilters,AnnDbBimap-method	BimapFiltering
getEntrezGenesFromTaxId	NCBI_getters
getGeneStuff	NCBI_getters
getGOFrameData	GOFrame
getGOFrameData,GOAllFrame-method	GOFrame
getGOFrameData,GOFrame-method	GOFrame
getKEGGFrameData	KEGGFrame
getKEGGFrameData,KEGGAllFrame-method	KEGGFrame
getKEGGFrameData,KEGGFrame-method	KEGGFrame
getProbeDataAffy	getProbeDataAffy
getProbeData_1lq	getProbeData_1lq
Go3AnnDbBimap	Bimap
Go3AnnDbBimap-class	Bimap
GOAllFrame	GOFrame
GOAllFrame,GOFrame-method	GOFrame
GOAllFrame-class	GOFrame
GoAnnDbBimap	Bimap
GoAnnDbBimap-class	Bimap
GOFrame	GOFrame
GOFrame,data.frame,character-method	GOFrame
GOFrame,data.frame,missing-method	GOFrame
GOFrame-class	GOFrame
GOID	GOTerms-class
GOID,character-method	GOTerms-class
GOID,GOTerms-method	GOTerms-class
GOID,GOTermsAnnDbBimap-method	GOTerms-class
GOTerms	GOTerms-class
GOTerms-class	GOTerms-class
GOTermsAnnDbBimap	Bimap
GOTermsAnnDbBimap-class	Bimap
hasMultiProbes	BimapFiltering
hasMultiProbes,ProbeAnnDbBimap-method	BimapFiltering
hasMultiProbes,ProbeAnnDbMap-method	BimapFiltering
hasMultiProbes,ProbeGo3AnnDbBimap-method	BimapFiltering
hasMultiProbes,ProbeIpiAnnDbMap-method	BimapFiltering
hasSingleProbes	BimapFiltering
hasSingleProbes,ProbeAnnDbBimap-method	BimapFiltering
hasSingleProbes,ProbeAnnDbMap-method	BimapFiltering
hasSingleProbes,ProbeGo3AnnDbBimap-method	BimapFiltering
hasSingleProbes,ProbeIpiAnnDbMap-method	BimapFiltering
head	Bimap-toTable
head,FlatBimap-method	Bimap-toTable
idConverter	inpIDMapper
initialize,FlatBimap-method	AnnotationDbi-internals
initialize,GOTerms-method	GOTerms-class
initialize,L2Rlink-method	AnnotationDbi-internals
inpIDMapper	inpIDMapper
intraIDMapper	inpIDMapper
IpiAnnDbMap	Bimap
IpiAnnDbMap-class	Bimap
isNA	Bimap-keys
isNA,ANY-method	Bimap-keys
isNA,Bimap-method	Bimap-keys
isNA,environment-method	Bimap-keys
KEGGFrame	KEGGFrame
KEGGFrame,data.frame,character-method	KEGGFrame
KEGGFrame,data.frame,missing-method	KEGGFrame
KEGGFrame-class	KEGGFrame
keyname	Bimap-toTable
keyname,Bimap-method	Bimap-toTable
keys	Bimap-keys
keys,Bimap-method	Bimap-keys
keys<-	Bimap-keys
keys<-,Bimap-method	Bimap-keys
L2Rlink	AnnotationDbi-internals
L2Rlink-class	AnnotationDbi-internals
length,Bimap-method	Bimap-keys
links	Bimap-toTable
links,AnnDbBimap-method	Bimap-toTable
links,FlatBimap-method	Bimap-toTable
links,Go3AnnDbBimap-method	Bimap-toTable
Lkeyname	Bimap-toTable
Lkeyname,AnnDbBimap-method	Bimap-toTable
Lkeyname,Bimap-method	Bimap-toTable
Lkeys	Bimap-direction
Lkeys,AnnDbBimap-method	Bimap-direction
Lkeys,FlatBimap-method	Bimap-direction
Lkeys,ProbeAnnDbBimap-method	Bimap-direction
Lkeys,ProbeAnnDbMap-method	Bimap-direction
Lkeys,ProbeGo3AnnDbBimap-method	Bimap-direction
Lkeys,ProbeIpiAnnDbMap-method	Bimap-direction
Lkeys<-	Bimap-direction
Lkeys<-,AnnDbBimap-method	Bimap-direction
Lkeys<-,FlatBimap-method	Bimap-direction
Llength	Bimap-direction
Llength,AnnDbBimap-method	Bimap-direction
Llength,Bimap-method	Bimap-direction
Llength,ProbeAnnDbBimap-method	Bimap-direction
Llength,ProbeAnnDbMap-method	Bimap-direction
Llength,ProbeGo3AnnDbBimap-method	Bimap-direction
Llength,ProbeIpiAnnDbMap-method	Bimap-direction
loadAnnDbPkgIndex	AnnDbPkg-maker
ls	AnnDbBimap-envirAPI
ls,Bimap-method	AnnDbBimap-envirAPI
makeAnnDbPkg	AnnDbPkg-maker
makeAnnDbPkg,AnnDbPkgSeed-method	AnnDbPkg-maker
makeAnnDbPkg,character-method	AnnDbPkg-maker
makeAnnDbPkg,list-method	AnnDbPkg-maker
makeARABIDOPSISCHIP_DB	sqlForge-makeCHIPDB
makeBOVINECHIP_DB	sqlForge-makeCHIPDB
makeCANINECHIP_DB	sqlForge-makeCHIPDB
makeCHICKENCHIP_DB	sqlForge-makeCHIPDB
makeDBPackage	sqlForge-makeCHIPDB
makeECOLICHIP_DB	sqlForge-makeCHIPDB
makeFLYCHIP_DB	sqlForge-makeCHIPDB
makeHUMANCHIP_DB	sqlForge-makeCHIPDB
makeMOUSECHIP_DB	sqlForge-makeCHIPDB
makePIGCHIP_DB	sqlForge-makeCHIPDB
makeProbePackage	makeProbePackage
makeRATCHIP_DB	sqlForge-makeCHIPDB
makeWORMCHIP_DB	sqlForge-makeCHIPDB
makeYEASTCHIP_DB	sqlForge-makeCHIPDB
makeZEBRAFISHCHIP_DB	sqlForge-makeCHIPDB
make_eg_to_go_map	make_eg_to_go_map
make_go_to_eg_map	make_eg_to_go_map
mappedkeys	Bimap-keys
mappedkeys,Bimap-method	Bimap-keys
mappedkeys,environment-method	Bimap-keys
mappedkeys,vector-method	Bimap-keys
mappedLkeys	Bimap-direction
mappedLkeys,AgiAnnDbMap-method	Bimap-direction
mappedLkeys,AnnDbBimap-method	Bimap-direction
mappedLkeys,FlatBimap-method	Bimap-direction
mappedLkeys,Go3AnnDbBimap-method	Bimap-direction
mappedRkeys	Bimap-direction
mappedRkeys,AnnDbBimap-method	Bimap-direction
mappedRkeys,AnnDbMap-method	Bimap-direction
mappedRkeys,FlatBimap-method	Bimap-direction
mappedRkeys,Go3AnnDbBimap-method	Bimap-direction
mergeToNamespaceAndExport	AnnotationDbi-internals
mget	AnnDbBimap-envirAPI
mget,AnnDbBimap-method	AnnDbBimap-envirAPI
mget,ANY,AnnDbBimap-method	AnnDbBimap-envirAPI
ncol	Bimap-toTable
ncol,Bimap-method	Bimap-toTable
nhit	Bimap-toTable
nhit,Bimap-method	Bimap-toTable
nhit,environment-method	Bimap-toTable
nhit,list-method	Bimap-toTable
nrow	Bimap-toTable
nrow,AnnDbBimap-method	Bimap-toTable
nrow,AnnDbTable-method	Bimap-toTable
nrow,FlatBimap-method	Bimap-toTable
nrow,Go3AnnDbBimap-method	Bimap-toTable
Ontology	GOTerms-class
Ontology,character-method	GOTerms-class
Ontology,GOTerms-method	GOTerms-class
Ontology,GOTermsAnnDbBimap-method	GOTerms-class
popBOVINECHIPDB	sqlForge-popDB
popBOVINEDB	sqlForge-popDB
popCANINECHIPDB	sqlForge-popDB
popCANINEDB	sqlForge-popDB
popCHICKENCHIPDB	sqlForge-popDB
popCHICKENDB	sqlForge-popDB
popECOLICHIPDB	sqlForge-popDB
popECOLIDB	sqlForge-popDB
popFLYCHIPDB	sqlForge-popDB
popFLYDB	sqlForge-popDB
popHUMANCHIPDB	sqlForge-popDB
popHUMANDB	sqlForge-popDB
popMALARIADB	sqlForge-popDB
popMOUSECHIPDB	sqlForge-popDB
popMOUSEDB	sqlForge-popDB
popPIGCHIPDB	sqlForge-popDB
popPIGDB	sqlForge-popDB
popRATCHIPDB	sqlForge-popDB
popRATDB	sqlForge-popDB
populateDB	sqlForge-popDB
popWORMCHIPDB	sqlForge-popDB
popWORMDB	sqlForge-popDB
popYEASTDB	sqlForge-popDB
popYEASTNCBIDB	sqlForge-popDB
popZEBRAFISHCHIPDB	sqlForge-popDB
popZEBRAFISHDB	sqlForge-popDB
print.probetable	print.probetable
ProbeAnnDbBimap	Bimap
ProbeAnnDbBimap-class	Bimap
ProbeAnnDbMap	Bimap
ProbeAnnDbMap-class	Bimap
ProbeGo3AnnDbBimap	Bimap
ProbeGo3AnnDbBimap-class	Bimap
ProbeIpiAnnDbMap	Bimap
ProbeIpiAnnDbMap-class	Bimap
Rattribnames	Bimap-toTable
Rattribnames,AnnDbBimap-method	Bimap-toTable
Rattribnames,Bimap-method	Bimap-toTable
Rattribnames<-	Bimap-toTable
Rattribnames<-,AnnDbBimap-method	Bimap-toTable
Rattribnames<-,FlatBimap-method	Bimap-toTable
Rattribnames<-,Go3AnnDbBimap-method	Bimap-toTable
revmap	Bimap-direction
revmap,AnnDbBimap-method	Bimap-direction
revmap,Bimap-method	Bimap-direction
revmap,environment-method	Bimap-direction
revmap,list-method	Bimap-direction
Rkeyname	Bimap-toTable
Rkeyname,AnnDbBimap-method	Bimap-toTable
Rkeyname,Bimap-method	Bimap-toTable
Rkeys	Bimap-direction
Rkeys,AnnDbBimap-method	Bimap-direction
Rkeys,AnnDbMap-method	Bimap-direction
Rkeys,FlatBimap-method	Bimap-direction
Rkeys,Go3AnnDbBimap-method	Bimap-direction
Rkeys<-	Bimap-direction
Rkeys<-,AnnDbBimap-method	Bimap-direction
Rkeys<-,FlatBimap-method	Bimap-direction
Rlength	Bimap-direction
Rlength,AnnDbBimap-method	Bimap-direction
Rlength,AnnDbMap-method	Bimap-direction
Rlength,Bimap-method	Bimap-direction
Rlength,Go3AnnDbBimap-method	Bimap-direction
sample	AnnDbBimap-envirAPI
sample,Bimap-method	AnnDbBimap-envirAPI
sample,environment-method	AnnDbBimap-envirAPI
Secondary	GOTerms-class
Secondary,character-method	GOTerms-class
Secondary,GOTerms-method	GOTerms-class
Secondary,GOTermsAnnDbBimap-method	GOTerms-class
setInpBimapFilter	BimapFiltering
setInpBimapFilter,InpAnnDbBimap-method	BimapFiltering
show,AnnDbBimap-method	Bimap
show,AnnDbTable-method	Bimap-keys
show,FlatBimap-method	Bimap
show,GOTerms-method	GOTerms-class
show,L2Rlink-method	AnnotationDbi-internals
showQCData	AnnotationDbi-internals
subset	Bimap-direction
subset,AnnDbBimap-method	Bimap-direction
subset,Bimap-method	Bimap-direction
summary,AnnDbBimap-method	Bimap
summary,Bimap-method	Bimap
Synonym	GOTerms-class
Synonym,character-method	GOTerms-class
Synonym,GOTerms-method	GOTerms-class
Synonym,GOTermsAnnDbBimap-method	GOTerms-class
tagname	Bimap-toTable
tagname,AnnDbBimap-method	Bimap-toTable
tagname,Bimap-method	Bimap-toTable
tail	Bimap-toTable
tail,FlatBimap-method	Bimap-toTable
Term	GOTerms-class
Term,character-method	GOTerms-class
Term,GOTerms-method	GOTerms-class
Term,GOTermsAnnDbBimap-method	GOTerms-class
toggleProbes	BimapFiltering
toggleProbes,ProbeAnnDbBimap-method	BimapFiltering
toggleProbes,ProbeAnnDbMap-method	BimapFiltering
toggleProbes,ProbeGo3AnnDbBimap-method	BimapFiltering
toggleProbes,ProbeIpiAnnDbMap-method	BimapFiltering
toSQLStringSet	toSQLStringSet
toTable	Bimap-toTable
toTable,AnnDbBimap-method	Bimap-toTable
toTable,FlatBimap-method	Bimap-toTable
unlist2	unlist2
wrapBaseDBPackages	sqlForge-wrapDBPackages
[,Bimap-method	Bimap-keys
[[,AnnDbBimap-method	AnnDbBimap-envirAPI