\HeaderA{internal functions}{Internal affyPLM functions}{internal functions}
\aliasA{bg.correct.gcrma}{internal functions}{bg.correct.gcrma}
\aliasA{bg.correct.shift}{internal functions}{bg.correct.shift}
\aliasA{bg.correct.stretch}{internal functions}{bg.correct.stretch}
\aliasA{convert.LESN.param}{internal functions}{convert.LESN.param}
\aliasA{fitPLM.old}{internal functions}{fitPLM.old}
\aliasA{get.background.code}{internal functions}{get.background.code}
\aliasA{get.default.psi.k}{internal functions}{get.default.psi.k}
\aliasA{get.normalization.code}{internal functions}{get.normalization.code}
\aliasA{get.psi.code}{internal functions}{get.psi.code}
\aliasA{get.summary.code}{internal functions}{get.summary.code}
\aliasA{normalize.AffyBatch.quantiles.chromosome}{internal functions}{normalize.AffyBatch.quantiles.chromosome}
\aliasA{PLM.designmatrix}{internal functions}{PLM.designmatrix}
\aliasA{PLM.designmatrix2}{internal functions}{PLM.designmatrix2}
\aliasA{PLM.designmatrix3}{internal functions}{PLM.designmatrix3}
\aliasA{verify.bg.param}{internal functions}{verify.bg.param}
\aliasA{verify.constraint.types}{internal functions}{verify.constraint.types}
\aliasA{verify.model.param}{internal functions}{verify.model.param}
\aliasA{verify.norm.param}{internal functions}{verify.norm.param}
\aliasA{verify.output.param}{internal functions}{verify.output.param}
\aliasA{verify.variable.types}{internal functions}{verify.variable.types}
\keyword{internal}{internal functions}
\begin{Description}\relax
Internal affyPLM functions
\end{Description}
\begin{Details}\relax
These are not to be called by the user and/or are undergoing testing
\end{Details}