QCReport            package:affyQCReport            R Documentation

_Q_C _R_e_p_o_r_t _f_o_r _A_f_f_y_B_a_t_c_h _o_b_j_e_c_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Creates a QC report for an object of class 'AffyBatch'.

_U_s_a_g_e:

     QCReport(object,file="AffyQCReport.pdf",...)

_A_r_g_u_m_e_n_t_s:

  object: An object of class 'AffyBatch'.

    file: A valid filename for the output PDF file. 

     ...: further arguments for 'plot' function.

_D_e_t_a_i_l_s:

     This creates a 6 page QC report in PDF file format. 

        *  The default output file is AffyQCReport.pdf created in the
           working directory.

        *  The 'AffyBatch' object is not required to contain phenotypic
           data but that data is used if available.

        *  The CDF environment must be available for the method to work
           fully.

     More details are available in the vignette.

_V_a_l_u_e:

     TRUE

_E_x_a_m_p_l_e_s:

       ## Not run: 
          
         library(affydata)
         data(Dilution)
         
       

         QCReport(Dilution,file="ExampleQC.pdf")   ##A QC report for the Example data will be generated
       ## End(Not run)