borderQC2            package:affyQCReport            R Documentation

_C_e_n_t_e_r _o_f _i_n_t_e_n_s_i_t_y _Q_C _p_l_o_t_s

_D_e_s_c_r_i_p_t_i_o_n:

     Creates the fifth page of the  QC report created by 'QCReport' for
     an object of class 'AffyBatch'   The page contains plots showing
     the center of intensity of the border element of arrays in an
     'AffyBatch'  object.

_U_s_a_g_e:

     borderQC2(object)

_A_r_g_u_m_e_n_t_s:

  object: 

     {An object of class 'AffyBatch'.}

_D_e_t_a_i_l_s:

     This creates the fifth page of a 'QCReport' report.  Plots of the
     center of intensity of the positive and negative border elements
     of arrays in a 'AffyBatch' object are shown.  This plot is useful
     for detecting spatial biases in intensities on an array.

     More details are available in the vignette.

_V_a_l_u_e:

     TRUE

_E_x_a_m_p_l_e_s:

        library(affydata)
         data(Dilution)

        borderQC2(Dilution)