\HeaderA{QCReport}{QC Report for AffyBatch objects}{QCReport}
\keyword{hplot}{QCReport}
\begin{Description}\relax
Creates a QC report for an object of class
\code{\LinkA{AffyBatch}{AffyBatch}}.
\end{Description}
\begin{Usage}
\begin{verbatim}
QCReport(object,file="AffyQCReport.pdf",...)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] An object of class \code{\LinkA{AffyBatch}{AffyBatch}}.
\item[\code{file}] A valid filename for the output PDF file. 
\item[\code{...}] further arguments for \code{\LinkA{plot}{plot}} function.
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
This creates a 6 page QC report in PDF file format. 
\Itemize{
\item The default output file is AffyQCReport.pdf created in the working directory.
\item The \code{\LinkA{AffyBatch}{AffyBatch}} object is not required to contain phenotypic data but that data is used if available.

\item The CDF environment must be available for the method to work fully.
}
More details are available in the vignette.
\end{Details}
\begin{Value}
TRUE
\end{Value}
\begin{Examples}
\begin{ExampleCode}
  ## Not run: 
     
    library(affydata)
    data(Dilution)
    
  

    QCReport(Dilution,file="ExampleQC.pdf")   ##A QC report for the Example data will be generated
  ## End(Not run)
\end{ExampleCode}
\end{Examples}