\HeaderA{correlationPlot}{Array-array intensity correlation plot}{correlationPlot}
\aliasA{QCReport-correlationPlot}{correlationPlot}{QCReport.Rdash.correlationPlot}
\keyword{hplot}{correlationPlot}
\begin{Description}\relax
Creates the sixth page of the QC report created by   \code{\LinkA{QCReport}{QCReport}} 
for an object of class
\code{\LinkA{AffyBatch}{AffyBatch}}   The page displays array-array intensity correlation coefficients.
\end{Description}
\begin{Usage}
\begin{verbatim}
correlationPlot(object)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] 
\end{ldescription}
 {An object of class \code{\LinkA{AffyBatch}{AffyBatch}}.}
\end{Arguments}
\begin{Details}\relax
This creates the sixth page of a \code{\LinkA{QCReport}{QCReport}} report. 
The page displays array-array intensity correlation coefficients for all pairs of arrays in an \code{\LinkA{AffyBatch}{AffyBatch}} object. Arrays are ordered according to phenotypic data if available. This plot is useful for detecting outlier arrays.

More details are available in the vignette.
\end{Details}
\begin{Value}
TRUE
\end{Value}
\begin{Examples}
\begin{ExampleCode}

   library(affydata)
    
   data(Dilution)

  correlationPlot(Dilution)

\end{ExampleCode}
\end{Examples}