Entry: .aaf.character
Aliases: .aaf.character
Keywords: file internal
Description: Generic constructor for classes extending character
URL: ../../../library/annaffy/html/aaf.character.html

Entry: .aaf.goterm
Aliases: .aaf.goterm
Keywords: file internal
Description: Fetch Gene Ontology term information
URL: ../../../library/annaffy/html/aaf.goterm.html

Entry: aaf.handler
Aliases: aaf.handler
Keywords: file
Description: Handle feching annotation data columns
URL: ../../../library/annaffy/html/aaf.handler.html

Entry: .aaf.integer
Aliases: .aaf.integer
Keywords: file internal
Description: Generic constructor for classes extending integer
URL: ../../../library/annaffy/html/aaf.integer.html

Entry: .aaf.raw
Aliases: .aaf.raw
Keywords: file internal
Description: Fetch raw annotation data
URL: ../../../library/annaffy/html/aaf.raw.html

Entry: aafChromLoc-class
Aliases: aafChromLoc-class
Keywords: classes
Description: Class aafChromLoc, a class for gene chromosome locations
URL: ../../../library/annaffy/html/aafChromLoc-class.html

Entry: aafChromLoc
Aliases: aafChromLoc
Keywords: file
Description: Constructor for aafChromLoc objects
URL: ../../../library/annaffy/html/aafChromLoc.html

Entry: aafChromosome-class
Aliases: aafChromosome-class
Keywords: classes
Description: Class aafChromosome, a class for gene chromosome assignments
URL: ../../../library/annaffy/html/aafChromosome-class.html

Entry: aafChromosome
Aliases: aafChromosome
Keywords: file
Description: Constructor for aafChromosome objects
URL: ../../../library/annaffy/html/aafChromosome.html

Entry: aafCytoband-class
Aliases: aafCytoband-class getText,aafCytoband-method getURL,aafCytoband-method show,aafCytoband-method
Keywords: classes
Description: Class aafCytoband, a class for cytoband data
URL: ../../../library/annaffy/html/aafCytoband-class.html

Entry: aafCytoband
Aliases: aafCytoband
Keywords: file
Description: Constructor for aafCytoband objects
URL: ../../../library/annaffy/html/aafCytoband.html

Entry: aafDescription-class
Aliases: aafDescription-class
Keywords: classes
Description: Class aafDescription, a class for gene descriptions
URL: ../../../library/annaffy/html/aafDescription-class.html

Entry: aafDescription
Aliases: aafDescription
Keywords: file
Description: Constructor for aafDescription objects
URL: ../../../library/annaffy/html/aafDescription.html

Entry: aafExpr
Aliases: aafExpr
Keywords: datasets
Description: Sample exprSet used for demonstration purposes
URL: ../../../library/annaffy/html/aafExpr.html

Entry: aafGO-class
Aliases: aafGO-class getText,aafGO-method getURL,aafGO-method getHTML,aafGO-method getTD,aafGO-method getCSS,aafGO-method
Keywords: classes
Description: Class aafGO, a class for gene ontology ids
URL: ../../../library/annaffy/html/aafGO-class.html

Entry: aafGO
Aliases: aafGO
Keywords: file
Description: Constructor for aafGO objects
URL: ../../../library/annaffy/html/aafGO.html

Entry: aafGOItem-class
Aliases: aafGOItem-class aafGOItem getText,aafGOItem-method getURL,aafGOItem-method getHTML,aafGOItem-method show,aafGOItem-method
Keywords: classes
Description: Class aafGOItem, a class for gene ontology id elements
URL: ../../../library/annaffy/html/aafGOItem-class.html

Entry: aafGenBank-class
Aliases: aafGenBank-class getURL,aafGenBank-method
Keywords: classes
Description: Class aafGenBank, a class for GenBank accession numbers
URL: ../../../library/annaffy/html/aafGenBank-class.html

Entry: aafGenBank
Aliases: aafGenBank
Keywords: file
Description: Constructor for aafGenBank objects
URL: ../../../library/annaffy/html/aafGenBank.html

Entry: aafIntensity-class
Aliases: aafIntensity-class aafIntensity getTD,aafIntensity-method
Keywords: classes
Description: Class aafIntensity, a class for gene expression values
URL: ../../../library/annaffy/html/aafIntensity-class.html

Entry: aafList-class
Aliases: aafList-class aafList getText,aafList-method getURL,aafList-method getHTML,aafList-method getTD,aafList-method getCSS,aafList-method [,aafList-method show,aafList-method
Keywords: classes
Description: Class aafList, a specialized subclass of list
URL: ../../../library/annaffy/html/aafList-class.html

Entry: aafLocusLink-class
Aliases: aafLocusLink-class getURL,aafLocusLink-method
Keywords: classes
Description: Class aafLocusLink, a class for LocusLink ids
URL: ../../../library/annaffy/html/aafLocusLink-class.html

Entry: aafLocusLink
Aliases: aafLocusLink
Keywords: file
Description: Constructor for aafLocusLink objects
URL: ../../../library/annaffy/html/aafLocusLink.html

Entry: aafPathway-class
Aliases: aafPathway-class getText,aafPathway-method getURL,aafPathway-method getHTML,aafPathway-method getTD,aafPathway-method getCSS,aafPathway-method
Keywords: classes
Description: Class aafPathway, a class for KEGG pathway ids
URL: ../../../library/annaffy/html/aafPathway-class.html

Entry: aafPathway
Aliases: aafPathway
Keywords: file
Description: Constructor for aafPathway objects
URL: ../../../library/annaffy/html/aafPathway.html

Entry: aafPathwayItem-class
Aliases: aafPathwayItem-class aafPathwayItem getText,aafPathwayItem-method getURL,aafPathwayItem-method getHTML,aafPathwayItem-method show,aafPathwayItem-method
Keywords: classes
Description: Class aafPathwayItem, a class for KEGG pathway id elements
URL: ../../../library/annaffy/html/aafPathwayItem-class.html

Entry: aafProbe-class
Aliases: aafProbe-class getURL,aafProbe-method
Keywords: classes
Description: Class aafProbe, a class for Probe ids
URL: ../../../library/annaffy/html/aafProbe-class.html

Entry: aafProbe
Aliases: aafProbe
Keywords: file
Description: Constructor for aafProbe objects
URL: ../../../library/annaffy/html/aafProbe.html

Entry: aafPubMed-class
Aliases: aafPubMed-class getURL,aafPubMed-method getHTML,aafPubMed-method getTD,aafPubMed-method getCSS,aafPubMed-method
Keywords: classes
Description: Class aafPubMed, a class for PubMed ids
URL: ../../../library/annaffy/html/aafPubMed-class.html

Entry: aafPubMed
Aliases: aafPubMed
Keywords: file
Description: Constructor for aafPubMed objects
URL: ../../../library/annaffy/html/aafPubMed.html

Entry: aafSearchGO
Aliases: aafSearchGO
Keywords: file
Description: Find probe ids corresponding to GO ids
URL: ../../../library/annaffy/html/aafSearchGO.html

Entry: aafSearchText
Aliases: aafSearchText
Keywords: file
Description: Search metadata annotation text
URL: ../../../library/annaffy/html/aafSearchText.html

Entry: aafSigned-class
Aliases: aafSigned-class aafSigned getTD,aafSigned-method getCSS,aafSigned-method
Keywords: classes
Description: Class aafSigned, a class for signed numerical data
URL: ../../../library/annaffy/html/aafSigned-class.html

Entry: aafSymbol-class
Aliases: aafSymbol-class
Keywords: classes
Description: Class aafSymbol, a class for gene symbols
URL: ../../../library/annaffy/html/aafSymbol-class.html

Entry: aafSymbol
Aliases: aafSymbol
Keywords: file
Description: Constructor for aafSymbol objects
URL: ../../../library/annaffy/html/aafSymbol.html

Entry: aafTable-class
Aliases: aafTable-class probeids probeids,aafTable-method probeids<- probeids<-,aafTable-method colnames colnames,aafTable,missing,missing-method colnames<- colnames<-,aafTable-method dim.aafTable merge.aafTable rbind.aafTable [,aafTable-method [[,aafTable-method $.aafTable saveHTML saveHTML,aafTable-method saveText saveText,aafTable-method
Keywords: classes
Description: Class aafTable, a tabular microarray data class
URL: ../../../library/annaffy/html/aafTable-class.html

Entry: aafTable
Aliases: aafTable
Keywords: file
Description: Constructor for aafTable objects
URL: ../../../library/annaffy/html/aafTable.html

Entry: aafTableAnn
Aliases: aafTableAnn
Keywords: file
Description: Constructor for aafTable objects from annotation data
URL: ../../../library/annaffy/html/aafTableAnn.html

Entry: aafTableFrame
Aliases: aafTableFrame
Keywords: file
Description: Constructor for aafTable objects from data frames
URL: ../../../library/annaffy/html/aafTableFrame.html

Entry: aafTableInt
Aliases: aafTableInt
Keywords: file
Description: Constructor for aafTable objects from exprSets
URL: ../../../library/annaffy/html/aafTableInt.html

Entry: aafUniGene-class
Aliases: aafUniGene-class getURL,aafUniGene-method getHTML,aafUniGene-method
Keywords: classes
Description: Class aafUniGene, a class for UniGene cluster ids
URL: ../../../library/annaffy/html/aafUniGene-class.html

Entry: aafUniGene
Aliases: aafUniGene
Keywords: file
Description: Constructor for aafUniGene objects
URL: ../../../library/annaffy/html/aafUniGene.html

Entry: chkPkgs
Aliases: chkPkgs
Keywords: internal
Description: A Function to Check for and Install Missing Annotation Packages
URL: ../../../library/annaffy/html/chkPkgs.html

Entry: getCSS-methods
Aliases: getCSS-methods getCSS getCSS,ANY-method
Keywords: methods
Description: Methods for function getCSS
URL: ../../../library/annaffy/html/getCSS-methods.html

Entry: getHTML-methods
Aliases: getHTML-methods getHTML getHTML,ANY-method
Keywords: methods
Description: Methods for function getHTML
URL: ../../../library/annaffy/html/getHTML-methods.html

Entry: getTD-methods
Aliases: getTD-methods getTD getTD,ANY-method
Keywords: methods
Description: Methods for function getTD
URL: ../../../library/annaffy/html/getTD-methods.html

Entry: getText-methods
Aliases: getText-methods getText getText,ANY-method
Keywords: methods
Description: Methods for function getText
URL: ../../../library/annaffy/html/getText-methods.html

Entry: getURL-methods
Aliases: getURL-methods getURL getURL,ANY-method
Keywords: methods
Description: Methods for function getURL
URL: ../../../library/annaffy/html/getURL-methods.html

Entry: is.annpkg
Aliases: is.annpkg
Keywords: file
Description: Determine if packages contain annotation
URL: ../../../library/annaffy/html/is.annpkg.html

Entry: selectorWidget
Aliases: selectorWidget
Keywords: file
Description: Dialog to select items from a list
URL: ../../../library/annaffy/html/selectorWidget.html