aafCytoband-class          package:annaffy          R Documentation

_C_l_a_s_s _a_a_f_C_y_t_o_b_a_n_d, _a _c_l_a_s_s _f_o_r _c_y_t_o_b_a_n_d _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     An abstraction for cytoband data from Bioconductor data packages.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects are generally created by the 'aafCytoband' constructor. 
     Objects can also be created manually by calls of the form
     'new("aafCytoband", band, genbank)'.

_S_l_o_t_s:

     '_b_a_n_d': Object of class 'character' containing genomic cytoband

     '_g_e_n_e': Object of class 'character' containing containing Gene ID

_M_e_t_h_o_d_s:

     _g_e_t_T_e_x_t (aafCytoband): Returns text of 'band'.

     _g_e_t_U_R_L (aafCytoband): Returns a URL corresponding entry in NCBI's
          cytoband map viewer.

     See generic implementations of 'getHTML', 'getTD', and 'getCSS'.

_A_u_t_h_o_r(_s):

     Colin A. Smith, annaffy@colinsmith.org

_S_e_e _A_l_s_o:

     aafCytoband