\HeaderA{aafPathway-class}{Class aafPathway, a class for KEGG pathway ids}{aafPathway.Rdash.class}
\aliasA{getCSS,aafPathway-method}{aafPathway-class}{getCSS,aafPathway.Rdash.method}
\aliasA{getHTML,aafPathway-method}{aafPathway-class}{getHTML,aafPathway.Rdash.method}
\aliasA{getTD,aafPathway-method}{aafPathway-class}{getTD,aafPathway.Rdash.method}
\aliasA{getText,aafPathway-method}{aafPathway-class}{getText,aafPathway.Rdash.method}
\aliasA{getURL,aafPathway-method}{aafPathway-class}{getURL,aafPathway.Rdash.method}
\keyword{classes}{aafPathway-class}
\begin{Description}\relax
An abstraction for KEGG pathway ids from Bioconductor data
packages. This class is actually extends \code{aafList} and holds
\code{aafPathwayItem} objects which have the actual annotation
data.
\end{Description}
\begin{Section}{Objects from the Class}
Objects are generally created by the \code{\LinkA{aafPathway}{aafPathway}} constructor.
Objects can also be created manually by calls of the form
\code{new("aafPathway", list(pathwayitems))}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{.Data}:] Object of class \code{list}
}
\end{Section}
\begin{Section}{Extends}
Class \code{aafList}, from data part.
\end{Section}
\begin{Section}{Methods}
\describe{
\item[getText] (aafGO): Returns a comma delimeted list of the individual
\code{aafPathwayItem} objects.

\item[getURL] (aafGO): Returns zero length character vector because this
method is not valid for this class.

\item[getHTML] (aafGO): Returns an HTML representation of each of the
individual \code{aafPathwayItem} objects, concatenated together.

\item[getTD] (aafGO): Returns an HTML table cell representation with the
class set to "aafPathway".

\item[getCSS] (aafGO): Returns a line of CSS which intends PathwayItem
paragraphs.

}
\end{Section}
\begin{Author}\relax
Colin A. Smith, \email{annaffy@colinsmith.org}
\end{Author}
\begin{SeeAlso}\relax
\LinkA{aafPathway}{aafPathway},
\LinkA{aafPathwayItem}{aafPathwayItem},
\LinkA{aafList}{aafList}
\end{SeeAlso}