\HeaderA{aafPathwayItem-class}{Class aafPathwayItem, a class for KEGG pathway id elements}{aafPathwayItem.Rdash.class}
\aliasA{aafPathwayItem}{aafPathwayItem-class}{aafPathwayItem}
\aliasA{getHTML,aafPathwayItem-method}{aafPathwayItem-class}{getHTML,aafPathwayItem.Rdash.method}
\aliasA{getText,aafPathwayItem-method}{aafPathwayItem-class}{getText,aafPathwayItem.Rdash.method}
\aliasA{getURL,aafPathwayItem-method}{aafPathwayItem-class}{getURL,aafPathwayItem.Rdash.method}
\aliasA{show,aafPathwayItem-method}{aafPathwayItem-class}{show,aafPathwayItem.Rdash.method}
\keyword{classes}{aafPathwayItem-class}
\begin{Description}\relax
An abstraction for KEGG pathway id elements from Bioconductor
data packages. Multiple instances of this class are held by the
wrapper class \code{aafPathway}.
\end{Description}
\begin{Section}{Objects from the Class}
Objects are generally created by the \code{\LinkA{aafPathway}{aafPathway}} constructor.
Objects can also be created manually by calls of the form
\code{new("aafPathwayItem", id, name, enzyme)}.
\end{Section}
\begin{Section}{Slots}
\describe{
\item[\code{id}:] Object of class \code{character} containing KEGG pathway id

\item[\code{name}:] Object of class \code{character} containing textual name

\item[\code{enzyme}:] Object of class \code{character} containing the Enzyme
Commision number if applicable

}
\end{Section}
\begin{Section}{Methods}
\describe{
\item[getText] (aafPathwayItem): Returns textual representation formatted
"\code{id}: \code{name}".

\item[getURL] (aafPathwayItem): Returns a URL to the corresponding entry
in the Kyoto Encyclopedia of Genes and Genomes database. If
there is a corresponding EC number, it will be highlighted
in red.

\item[getHTML] (aafPathwayItem): Returns an HTML representation including the
URL link and pathway name.

}
\end{Section}
\begin{Author}\relax
Colin A. Smith, \email{annaffy@colinsmith.org}
\end{Author}
\begin{SeeAlso}\relax
\LinkA{aafPathway-class}{aafPathway.Rdash.class},
\LinkA{aafPathway}{aafPathway}
\end{SeeAlso}