Entry: affinity.spline.coefs
Aliases: affinity.spline.coefs
Keywords: datasets
Description: Spline coefficients for estimation of affinity from probe sequence
URL: ../../../library/gcrma/html/affinity.spline.coefs.html

Entry: bg.adjust.affinities
Aliases: bg.adjust.affinities bg.adjust.mm bg.adjust.fullmodel bg.adjust.constant bg.adjust.optical
Keywords: manip
Description: Background adjustment with sequence information (internal function)
URL: ../../../library/gcrma/html/bg.adjust.affinities.html

Entry: bg.adjust.gcrma
Aliases: bg.adjust.gcrma
Keywords: manip
Description: GCRMA background adjust (internal function)
URL: ../../../library/gcrma/html/bg.adjust.gcrma.html

Entry: bg.parameters.ns
Aliases: bg.parameters.ns left.sigma PAV average.for.PAV
Keywords: manip
Description: Estimation of non-specific Binding Background Parameters
URL: ../../../library/gcrma/html/bg.parameters.ns.html

Entry: compute.affinities
Aliases: compute.affinities check.probes base.profiles base.profiles.mm base.profiles.nc compute.affinity.coef compute.affinities.local plotBaseProfiles
Keywords: manip
Description: Probe Affinity computation
URL: ../../../library/gcrma/html/compute.affinities.html

Entry: fast.bkg
Aliases: fast.bkg mem.bkg
Keywords: internal
Description: Internal functions for justGCRMA
URL: ../../../library/gcrma/html/fast.bkg.html

Entry: gcrma
Aliases: gcrma gcrma.bg.transformation.fast gcrma.bg.transformation
Keywords: manip
Description: Robust Multi-Array expression measure using sequence information
URL: ../../../library/gcrma/html/gcrma.html

Entry: gcrma.engine
Aliases: gcrma.engine
Keywords: manip
Description: GCRMA background adjust engine(internal function)
URL: ../../../library/gcrma/html/gcrma.engine.html

Entry: gcrma.engine2
Aliases: gcrma.engine2
Keywords: manip
Description: GCRMA background adjust engine(internal function)
URL: ../../../library/gcrma/html/gcrma.engine2.html

Entry: getCDF
Aliases: getCDF getProbePackage
Keywords: internal
Description: Functions for Automatic Download of Packages
URL: ../../../library/gcrma/html/getCDF.html

Entry: justGCRMA
Aliases: justGCRMA just.gcrma
Keywords: manip
Description: Compute GCRMA Directly from CEL Files
URL: ../../../library/gcrma/html/justGCRMA.html