GetColor A function to get the Red-Blue color scheme used by dChip Makesense Produce Smoothed Sense/Anti-sense For All Chromosomes alongChrom A function for plotting expression data from an ExpressionSet for a given chromosome. amplicon.plot Create an amplicon plot cColor A function for marking specific probes on a cPlot. cPlot A plotting function for chromosomes. cScale A function for mapping chromosome length to a number of points. connection-class Virtual S4 classes for method dispatching expressionSet133a A small dataset for testing histStack Stacked histogram imageMap-methods Write an HTML IMG tag together with a MAP image map. make.chromOrd Make a chromOrd object multiecdf Multiple empirical cumulative distribution functions (ecdf) and densities openHtmlPage Open and close an HTML file for writing. panel.smoothScatter Lattice panel function analogous to smoothScatter plotChr Plot Smoothed Sense/Anti-sense of Specified Chromosomes plotExpressionGraph A function to plot a graph colored by expression data savepng Save the contents of the current graphics device to a file smoothScatter Scatterplots with smoothed densities color representation