addLines	plotMA
addPoints	plotMA
addText	plotMA
as	coerce-methods
boxplot,marrayNorm-method	boxplot
boxplot,marrayRaw-method	boxplot
cbind,marrayNorm-method	marrayNorm-class
cbind,marrayRaw-method	marrayRaw-class
cbind.marrayNorm	cbind
cbind.marrayRaw	cbind
checkTargetInfo	checkTargetInfo
coerce	coerce-methods
coerce,marrayRaw,marrayNorm-method	marrayNorm-class
coerce-methods	coerce-methods
controlCode	maGenControls
cor.na	maNA
dim.marrayInfo	dim
dim.marrayNorm	dim
dim.marrayRaw	dim
findID	findID
fish.gal	swirl
gsubAnchor	marray-internal
htmlPage	htmlPage
image,marrayNorm-method	image
image,marrayRaw-method	image
length.na	maNA
lines,marrayNorm-method	plotMA
lines,marrayRaw-method	plotMA
log.na	maNA
ma2D	ma2D
maA	marrayNorm-class
maA,marrayNorm-method	marrayNorm-class
maA,marrayRaw-method	marrayRaw-class
maA<-	marrayNorm-class
maA<-,marrayNorm,matrix-method	marrayNorm-class
maBoxplot	maBoxplot
maColorBar	maColorBar
maCompCoord	maCompCoord
maCompInd	maCompInd
maCompLayout	maCompLayout
maCompNormA	maCompNormA
maCompNormEq	maCompNormA
maCompPlate	maCompPlate
maControls	marrayLayout-class
maControls,marrayLayout-method	marrayLayout-class
maControls,marrayNorm-method	marrayNorm-class
maControls,marrayRaw-method	marrayRaw-class
maControls<-	marrayLayout-class
maControls<-,marrayLayout-method	marrayLayout-class
maControls<-,marrayNorm-method	marrayNorm-class
maControls<-,marrayRaw-method	marrayRaw-class
maCoord2Ind	maCoord2Ind
maDefaultPar	maDefaultPar
maDotsDefaults	maDotsDefaults
maDotsMatch	maDotsMatch
maGb	marrayRaw-class
maGb,marrayRaw-method	marrayRaw-class
maGb<-	marrayRaw-class
maGb<-,marrayRaw,matrix-method	marrayRaw-class
maGb<-,marrayRaw,NULL-method	marrayRaw-class
maGenControls	maGenControls
maGeneTable	maGeneTable
maGf	marrayRaw-class
maGf,marrayRaw-method	marrayRaw-class
maGf<-	marrayRaw-class
maGf<-,marrayRaw,matrix-method	marrayRaw-class
maGnames	marrayRaw-class
maGnames,marrayNorm-method	marrayNorm-class
maGnames,marrayRaw-method	marrayRaw-class
maGnames<-	marrayRaw-class
maGnames<-,marrayNorm,marrayInfo-method	marrayInfo-class
maGnames<-,marrayRaw,marrayInfo-method	marrayInfo-class
maGnames<-,marraySpots,marrayInfo-method	marrayInfo-class
maGridCol	marrayLayout-class
maGridCol,marrayLayout-method	marrayLayout-class
maGridCol,marrayNorm-method	marrayNorm-class
maGridCol,marrayRaw-method	marrayRaw-class
maGridRow	marrayLayout-class
maGridRow,marrayLayout-method	marrayLayout-class
maGridRow,marrayNorm-method	marrayNorm-class
maGridRow,marrayRaw-method	marrayRaw-class
maImage	maImage
maImage.func	maImage.func
maInd2Coord	maInd2Coord
maInfo	marrayInfo-class
maInfo,marrayInfo-method	marrayInfo-class
maInfo<-	marrayInfo-class
maInfo<-,marrayInfo,data.frame-method	marrayInfo-class
maLabels	marrayInfo-class
maLabels,marrayInfo-method	marrayInfo-class
maLabels<-	marrayInfo-class
maLabels<-,marrayInfo,character-method	marrayInfo-class
maLabels<-,marrayInfo,numeric-method	marrayInfo-class
maLayout	marrayRaw-class
maLayout,marrayNorm-method	marrayNorm-class
maLayout,marrayRaw-method	marrayRaw-class
maLayout<-	marrayRaw-class
maLayout<-,marrayNorm,marrayLayout-method	marrayLayout-class
maLayout<-,marrayRaw,marrayLayout-method	marrayLayout-class
maLegendLines	maLegendLines
maLG	marrayRaw-class
maLG,marrayNorm-method	marrayNorm-class
maLG,marrayRaw-method	marrayRaw-class
maLoess	maLoess
maLoessLines	maLoessLines
maLowessLines	maLoessLines
maLR	marrayRaw-class
maLR,marrayNorm-method	marrayNorm-class
maLR,marrayRaw-method	marrayRaw-class
maM	marrayNorm-class
maM,marrayNorm-method	marrayNorm-class
maM,marrayRaw-method	marrayRaw-class
maM<-	marrayNorm-class
maM<-,marrayNorm,matrix-method	marrayNorm-class
maMAD	maMAD
maMed	maMed
maMloc	marrayNorm-class
maMloc,marrayNorm-method	marrayNorm-class
maMloc<-	marrayNorm-class
maMloc<-,marrayNorm,matrix-method	marrayNorm-class
maMscale	marrayNorm-class
maMscale,marrayNorm-method	marrayNorm-class
maMscale<-	marrayNorm-class
maMscale<-,marrayNorm,matrix-method	marrayNorm-class
maNgc	marrayLayout-class
maNgc,marrayLayout-method	marrayLayout-class
maNgc,marrayNorm-method	marrayNorm-class
maNgc,marrayRaw-method	marrayRaw-class
maNgc<-	marrayLayout-class
maNgc<-,marrayLayout,numeric-method	marrayLayout-class
maNgc<-,marrayNorm,numeric-method	marrayNorm-class
maNgc<-,marrayRaw,numeric-method	marrayRaw-class
maNgr	marrayLayout-class
maNgr,marrayLayout-method	marrayLayout-class
maNgr,marrayNorm-method	marrayNorm-class
maNgr,marrayRaw-method	marrayRaw-class
maNgr<-	marrayLayout-class
maNgr<-,marrayLayout,numeric-method	marrayLayout-class
maNgr<-,marrayNorm,numeric-method	marrayNorm-class
maNgr<-,marrayRaw,numeric-method	marrayRaw-class
maNorm	maNorm
maNorm2D	maNorm2D
maNormCall	marrayNorm-class
maNormCall,marrayNorm-method	marrayNorm-class
maNormLoess	maNormLoess
maNormMAD	maNormMAD
maNormMain	maNormMain
maNormMed	maNormMed
maNormScale	maNormScale
maNotes	marrayInfo-class
maNotes,marrayInfo-method	marrayInfo-class
maNotes,marrayLayout-method	marrayLayout-class
maNotes,marrayNorm-method	marrayNorm-class
maNotes,marrayRaw-method	marrayRaw-class
maNotes<-	marrayInfo-class
maNotes<-,marrayInfo,character-method	marrayInfo-class
maNotes<-,marrayLayout,character-method	marrayLayout-class
maNotes<-,marrayNorm,character-method	marrayNorm-class
maNotes<-,marrayRaw,character-method	marrayRaw-class
maNsamples	marrayRaw-class
maNsamples,marrayNorm-method	marrayNorm-class
maNsamples,marrayRaw-method	marrayRaw-class
maNsc	marrayLayout-class
maNsc,marrayLayout-method	marrayLayout-class
maNsc,marrayNorm-method	marrayNorm-class
maNsc,marrayRaw-method	marrayRaw-class
maNsc<-	marrayLayout-class
maNsc<-,marrayLayout,numeric-method	marrayLayout-class
maNsc<-,marrayNorm,numeric-method	marrayNorm-class
maNsc<-,marrayRaw,numeric-method	marrayRaw-class
maNspots	marrayLayout-class
maNspots,marrayLayout-method	marrayLayout-class
maNspots,marrayNorm-method	marrayNorm-class
maNspots,marrayRaw-method	marrayRaw-class
maNspots<-	marrayLayout-class
maNspots<-,marrayLayout,numeric-method	marrayLayout-class
maNspots<-,marrayNorm,numeric-method	marrayNorm-class
maNspots<-,marrayRaw,numeric-method	marrayRaw-class
maNsr	marrayLayout-class
maNsr,marrayLayout-method	marrayLayout-class
maNsr,marrayNorm-method	marrayNorm-class
maNsr,marrayRaw-method	marrayRaw-class
maNsr<-	marrayLayout-class
maNsr<-,marrayLayout,numeric-method	marrayLayout-class
maNsr<-,marrayNorm,numeric-method	marrayNorm-class
maNsr<-,marrayRaw,numeric-method	marrayRaw-class
maNum2Logic	maNum2Logic
maPalette	maPalette
mapGeneInfo	mapGeneInfo
maPlate	marrayLayout-class
maPlate,marrayLayout-method	marrayLayout-class
maPlate,marrayNorm-method	marrayNorm-class
maPlate,marrayRaw-method	marrayRaw-class
maPlate<-	marrayLayout-class
maPlate<-,marrayLayout-method	marrayLayout-class
maPlate<-,marrayNorm-method	marrayNorm-class
maPlate<-,marrayRaw-method	marrayRaw-class
maPlot	maPlot
maPlot.func	maPlot.func
maPrintTip	marrayLayout-class
maPrintTip,marrayLayout-method	marrayLayout-class
maPrintTip,marrayNorm-method	marrayNorm-class
maPrintTip,marrayRaw-method	marrayRaw-class
maRb	marrayRaw-class
maRb,marrayRaw-method	marrayRaw-class
maRb<-	marrayRaw-class
maRb<-,marrayRaw,matrix-method	marrayRaw-class
maRb<-,marrayRaw,NULL-method	marrayRaw-class
maRf	marrayRaw-class
maRf,marrayRaw-method	marrayRaw-class
maRf<-	marrayRaw-class
maRf<-,marrayRaw,matrix-method	marrayRaw-class
marrayInfo	marrayInfo-class
marrayInfo-class	marrayInfo-class
marrayLayout	marrayLayout-class
marrayLayout-class	marrayLayout-class
marrayNorm	marrayNorm-class
marrayNorm-class	marrayNorm-class
marrayRaw	marrayRaw-class
marrayRaw-class	marrayRaw-class
maSelectGnames	maSelectGnames
maSpotCol	marrayLayout-class
maSpotCol,marrayLayout-method	marrayLayout-class
maSpotCol,marrayNorm-method	marrayNorm-class
maSpotCol,marrayRaw-method	marrayRaw-class
maSpotRow	marrayLayout-class
maSpotRow,marrayLayout-method	marrayLayout-class
maSpotRow,marrayNorm-method	marrayNorm-class
maSpotRow,marrayRaw-method	marrayRaw-class
maSub	marrayLayout-class
maSub,marrayLayout-method	marrayLayout-class
maSub,marrayNorm-method	marrayNorm-class
maSub,marrayRaw-method	marrayRaw-class
maSub<-	marrayLayout-class
maSub<-,marrayLayout,logical-method	marrayLayout-class
maSub<-,marrayLayout,numeric-method	marrayLayout-class
maSub<-,marrayNorm-method	marrayNorm-class
maSub<-,marrayRaw-method	marrayRaw-class
maTargets	marrayRaw-class
maTargets,marrayNorm-method	marrayNorm-class
maTargets,marrayRaw-method	marrayRaw-class
maTargets<-	marrayRaw-class
maTargets<-,marrayNorm,marrayInfo-method	marrayInfo-class
maTargets<-,marrayRaw,marrayInfo-method	marrayInfo-class
maText	maText
maTop	maTop
maTwoSamples	maTwoSamples
maW	marrayRaw-class
maW,marrayNorm-method	marrayNorm-class
maW,marrayRaw-method	marrayRaw-class
maW<-	marrayRaw-class
maW<-,marrayNorm,matrix-method	marrayNorm-class
maW<-,marrayRaw,matrix-method	marrayRaw-class
mean.na	maNA
opVersionID	opVersionID
order.na	maNA
plot.gene.cluster	marray-internal
plot.marrayNorm	plotMA
plot.marrayRaw	plotMA
points,marrayNorm-method	plotMA
points,marrayRaw-method	plotMA
print,marrayInfo-method	marrayInfo-class
print,marrayLayout-method	marrayLayout-class
print,marrayNorm-method	marrayNorm-class
print,marrayRaw-method	marrayRaw-class
prod.na	maNA
quantile.na	maNA
rbind,marrayInfo-method	marrayInfo-class
rbind.marrayInfo	cbind
read.Agilent	read.marrayRaw
read.fname	marray-internal
read.Galfile	read.Galfile
read.GenePix	read.marrayRaw
read.marrayInfo	read.marrayInfo
read.marrayLayout	read.marrayLayout
read.marrayRaw	read.marrayRaw
read.SMD	read.marrayRaw
read.Spot	read.marrayRaw
rm.na	rm.na
scale.na	maNA
SFGL	mapGeneInfo
show,marrayNorm-method	marrayNorm-class
show,marrayRaw-method	marrayRaw-class
show,ShowLargeObject-method	showLargeObject
ShowLargeObject-class	showLargeObject
stat.confband.text	stat.confband.text
stat.gene.cluster	marray-internal
stat.gnames	stat.gnames
sum.na	maNA
summary,marrayInfo-method	marrayInfo-class
summary,marrayLayout-method	marrayLayout-class
summary,marrayNorm-method	marrayNorm-class
summary,marrayRaw-method	marrayRaw-class
summary-methods	print-methods
swirl	swirl
swirl.1.spot	swirl
swirl.2.spot	swirl
swirl.3.spot	swirl
swirl.4.spot	swirl
SwirlSample	swirl
SwirlSample.txt	swirl
table2html	htmlPage
tablegen	marray-internal
text,marrayNorm-method	plotMA
text,marrayRaw-method	plotMA
UCBFGL	mapGeneInfo
URLstring	mapGeneInfo
var.na	maNA
widget.mapGeneInfo	mapGeneInfo
widget.marrayInfo	read.marrayInfo
widget.marrayLayout	read.marrayLayout
widget.marrayRaw	read.marrayRaw
widget.TwoSamples	maTwoSamples
write.list	write.list
write.marray	write.marray
write.xls	write.xls
[	bracketMethods
[,marrayInfo-method	marrayInfo-class
[,marrayLayout-method	marrayLayout-class
[,marrayNorm-method	marrayNorm-class
[,marrayRaw-method	marrayRaw-class
[-methods	bracketMethods