add.target2href	siggenes-internal
adjust.for.mt	siggenes-internal
args.ebam	help.ebam
args.finda0	help.finda0
args.sam	help.sam
build.dperm	siggenes-internal
cat.ebam	chisq.ebam
cat.null	siggenes-internal
cat.null.approx	siggenes-internal
cat.null.approx2	siggenes-internal
cat.stat	chisq.stat
check.chipname	siggenes-internal
checkA0	siggenes-internal
checkFUNout	siggenes-internal
checkInitialDelta	siggenes-internal
checkQuantiles	siggenes-internal
chisq.ebam	chisq.ebam
chisq.stat	chisq.stat
chisqClass	siggenes-internal
chisqClassSplitted	siggenes-internal
col2hex	siggenes-internal
compFailure	siggenes-internal
compFailureMat2	siggenes-internal
compFailureSubset	siggenes-internal
compFalse	siggenes-internal
compNumber	siggenes-internal
compPermStat	siggenes-internal
compRatio	siggenes-internal
computeContCols	siggenes-internal
computeRS	siggenes-internal
d.null	siggenes-internal
d.stat	d.stat
delta.plot	delta.plot
denspr	denspr
EBAM	EBAM-class
ebam	ebam
EBAM-class	EBAM-class
ebam2excel	siggenes2excel
ebam2html	siggenes2html
ebamA0	siggenes-internal
ebamControl	ebamControl
find.a0	find.a0
find.a0Control	ebamControl
FindA0	FindA0-class
FindA0-class	FindA0-class
finda02html	siggenes-internal
findDelta	findDelta
findFDR	siggenes-internal
findNumber	siggenes-internal
formatSAM	siggenes-internal
fudge2	fudge2
fuzzy.ebam	fuzzy.ebam
fuzzy.stat	fuzzy.ebam
getFailure	siggenes-internal
getQuantiles	siggenes-internal
getSuccesses	siggenes-internal
getTD4Affy	siggenes-internal
getTD4rs	siggenes-internal
help.ebam	help.ebam
help.finda0	help.finda0
help.sam	help.sam
identify,SAM-method	SAM-class
limma2ebam	limma2sam
limma2sam	limma2sam
link.genes	link.genes
link.siggenes	link.siggenes
list.siggenes	list.siggenes
make.tablecode	siggenes-internal
makeA0mat	siggenes-internal
md.plot	md.plot
na.handling	siggenes-internal
na.replace.cont	siggenes-internal
nclass.wand	nclass.wand
pairt.cl.transform	siggenes-internal
pairt.samp	siggenes-internal
pairt.samp.transform	siggenes-internal
pi0.est	pi0.est
pi0.est2	siggenes-internal
pi0.est3	siggenes-internal
plot,EBAM-method	EBAM-class
plot,FindA0-method	FindA0-class
plot,SAM-method	SAM-class
plotArguments	plotArguments
plotFindArguments	plotFindArguments
pretty.mat.fdr	siggenes-internal
pretty.mat.sig	siggenes-internal
print,EBAM-method	EBAM-class
print,FindA0-method	FindA0-class
print,SAM-method	SAM-class
print,sumEBAM-method	sumSAM-class
print,sumSAM-method	sumSAM-class
quantiles	siggenes-internal
qvalue.cal	qvalue.cal
recodeLevel	siggenes-internal
recodeVal	siggenes-internal
Rfold.cal	siggenes-internal
rowRanksWilc	rowWilcoxon
rowWilcoxon	rowWilcoxon
SAM	SAM-class
sam	sam
SAM-class	SAM-class
sam.plot2	sam.plot2
sam2excel	siggenes2excel
sam2html	siggenes2html
samControl	samControl
setup.mat.samp	siggenes-internal
show,EBAM-method	EBAM-class
show,FindA0-method	FindA0-class
show,SAM-method	SAM-class
show,sumEBAM-method	sumSAM-class
show,sumSAM-method	sumSAM-class
siggenes2excel	siggenes2excel
siggenes2html	siggenes2html
stats.cal	siggenes-internal
sumEBAM-class	sumSAM-class
summary,EBAM-method	EBAM-class
summary,SAM-method	SAM-class
sumSAM-class	sumSAM-class
trend.ebam	trend.ebam
trend.ebam.data.frame	trend.ebam
trend.ebam.default	trend.ebam
trend.ebam.list	trend.ebam
trend.stat	trend.stat
trend.stat.data.frame	trend.stat
trend.stat.default	trend.stat
trend.stat.list	trend.stat
truncZ	siggenes-internal
wilc.ebam	wilc.ebam
wilc.stat	wilc.stat
z.ebam	z.ebam
z.find	z.ebam