qc.have.params          package:simpleaffy          R Documentation

_D_o_e_s _s_i_m_p_l_e_a_f_f_y _h_a_v_e _a _Q_C _d_e_f_i_n_i_t_i_o_n _f_i_l_e _f_o_r _t_h_e _s_p_e_c_i_f_i_e_d _a_r_r_a_y?

_D_e_s_c_r_i_p_t_i_o_n:

     Simpleaffy requires a definition file describing the qc probes,
     spikes, alpha values, etc. for the array of interest. This is used
     to initialize the QC environment for the array (usually implicitly
     within the 'qc' function), by a call to   'setQCEnvironment'. This
     function can be used to see if the specified array has a
     definition file.

_U_s_a_g_e:

       qc.have.params(name)

_A_r_g_u_m_e_n_t_s:

    name: The 'clean' CDF name of the array (i.e. the result of calling
          'cleancdfname' on the 'cdfName' of the 'AffyBatch' object
          containing the array data of interest.

_V_a_l_u_e:

     True or False

_N_o_t_e:

_A_u_t_h_o_r(_s):

     Crispin J Miller

_R_e_f_e_r_e_n_c_e_s:

     http://bioinformatics.picr.man.ac.uk/

_S_e_e _A_l_s_o:

     'setQCEnvironment' 'qc' 'qc.ok' 'cdfName' 'cleancdfname'

_E_x_a_m_p_l_e_s:

       qc.have.params("nosucharraycdf")
       qc.have.params("hgu133plus2cdf")
       setQCEnvironment("hgu133plus2cdf")
       qc.have.params(cleancdfname("HG-U133_Plus_2"))