Entry: getIntensityMatrix
Aliases: getIntensityMatrix
Keywords: manip
Description: Extract a matrix of microarray intensities from various kinds of objects
URL: ../../../library/vsn/html/getIntensityMatrix.html

Entry: kidney
Aliases: kidney
Keywords: datasets
Description: Intensity data for 1 cDNA slide with two adjacent tissue samples from a nephrectomy (kidney)
URL: ../../../library/vsn/html/kidney.html

Entry: lymphoma
Aliases: lymphoma
Keywords: datasets
Description: Intensity data for 8 cDNA slides with CLL and DLBL samples from the Alizadeh et al. paper in Nature 2000
URL: ../../../library/vsn/html/lymphoma.html

Entry: meanSdPlot
Aliases: meanSdPlot
Keywords: hplot
Description: Plot row standard deviations versus row means
URL: ../../../library/vsn/html/meanSdPlot.html

Entry: normalize.AffyBatch.vsn
Aliases: normalize.AffyBatch.vsn
Keywords: robust
Description: Wrapper for vsn to be used as a normalization method in the package affy
URL: ../../../library/vsn/html/normalize.AffyBatch.vsn.html

Entry: sagmbSimulateData
Aliases: sagmbSimulateData sagmbAssess
Keywords: datagen
Description: Simulate data and assess vsn's parameter estimation
URL: ../../../library/vsn/html/sagmbSimulateData.html

Entry: vsn
Aliases: vsn
Keywords: robust
Description: Variance stabilization and calibration for microarray data.
URL: ../../../library/vsn/html/vsn.html

Entry: vsnPlotPar
Aliases: vsnPlotPar
Keywords: hplot
Description: Plot trajectories of calibration and transformation parameters for a vsn fit
URL: ../../../library/vsn/html/vsnPlotPar.html

Entry: vsnh
Aliases: vsnh
Keywords: 
Description: A function that transforms a matrix of microarray intensities
URL: ../../../library/vsn/html/vsnh.html